Open retaj opened 7 years ago
Thanks, Marcel!
On Wednesday, March 8, 2017 10:05:46 AM EST Marcel Schilling wrote:
- [ ] integrate columns in a 'meaningful' (tm @marvin-jens) way :wink:
You will be assigned to three issues for each funny comment :maggy:
@marvin-jens would you have time for a skype call on friday? @greeco also offered to help out with finishing off find_circ2
if needed as he's using it now, too.
Hi petar,
It is aggregating the information on each circ from multiple runs of find circ. So, read counts would be added up and you'd get a comma separated list of them in an extra column, matched by a sorted list of run/sample identifiers in the adjacent column. This, to me, was the main feature. Others is quality metrics: best uniqueness, or whatever we wanna use, should be max of all runs, for example. Does this help?
Sounds good. What time? 10:30 EST would be good for me. Best, -Marvin
On Wednesday, March 8, 2017 11:05:37 AM EST Marcel Schilling wrote:
@marvin-jens would you have time for a skype call on friday? @greeko also offered to help out with finishign off
find_circ2
if needed as he's using it now, too.
sounds good to me @retaj, @greeco: what about you guys?
Sure, I'm joining!
Hey guys, skype deactivated my account and their server seems down. How about whatsapp? Or wire?
On Wednesday, March 8, 2017 11:05:37 AM EST Marcel Schilling wrote:
@marvin-jens would you have time for a skype call on friday? @greeko also offered to help out with finishign off
find_circ2
if needed as he's using it now, too.
I have neither
@retaj: Is this still on? I could try to make some time for this. Really shoudn't be that hard. Most work would probably defining a good set of test cases.
Would be very helpful if someone (@mschilli87? @marvin-jens?) could let me know what merge_bed.py was actually doing :) Checklist of features/functions sorted by importance? :winkwink: