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BIMSBbioinfo / ciRcus

An R package for annotation of circular RNAs
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stop relying on specific contig names #29

Open mschilli87 opened 7 years ago

mschilli87 commented 7 years ago

Modifying seqlevels like here is not robust (in C. elegans for example UCSC's "chrM" is not "MT" in Ensembl, but "MtDNA" (or something like this)).

I'd suggest to do these kind of things by modifying seqlevelsStyle.

Maybe we can even get rid of this completely & filter out mitochondrial circRNAs without assuming a fixed contig name?

al2na commented 7 years ago

https://dl.dropboxusercontent.com/u/1373164/please_check_the_code_for_bugs..mp3