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BIMSBbioinfo / ciRcus

An R package for annotation of circular RNAs
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Install library problems #5

Closed KateK closed 7 years ago

KateK commented 8 years ago

I tried to install ciRcus like it's described in readme, but it doesn't work. I got the error like this:

ERROR: dependencies ‘AnnotationHub’, ‘biomaRt’, ‘GenomicFeatures’ are not available for package ‘ciRcus’

I also tried to install it from source with the same error. Could you help ?

Thanks

edit (@mschilli87): formatting

frenkiboy commented 8 years ago

Dear KateK,

Thank you so much for using ciRcus! The error means that you do not have all of the required packages installed.

if you do:

source("https://bioconductor.org/biocLite.R")
biocLite(c('AnnotationHub','biomaRt','GenomicFeatures'))

You should be able to install ciRcus.

Please let me know if you have any other problems.

edit (@mschilli87): formatting

mschilli87 commented 7 years ago

I guess this can be closed.

mschilli87 commented 7 years ago

@KateK: Please re-open this issue if @frenkiboy's solution doesn't work for you.