BIMSBbioinfo genomation issues

BIMSBbioinfo / genomation

R package for genomic feature analysis and visualization

http://bioinformatics.mdc-berlin.de/genomation/

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issues

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Issue with annotateWithFeatures

#214 maf222 opened 3 weeks ago
0
Error when installing the package

#213 Simple53 opened 5 months ago
0
ScoreMatrixBin not working in version 1.35.0

#212 shuye2009 opened 6 months ago
1
`Error in GenomicRangesList(features = feat, flanks = flanks) : could not find function "GenomicRangesList"`

#211 danli349 opened 7 months ago
2
Error in validObject(.Object) : invalid class "ScoreMatrix" object: superclass "mMatrix" not defined in the environment of the object's class

#210 danli349 opened 8 months ago
2
Error: invalid class “ScoreMatrix” object: superclass "mMatrix" not defined in the environment of the object's class

#209 jnmaloof closed 9 months ago
1
Error while anotaton od methilation data for both maping to genes and CPG island

#208 Kaustav-93 opened 10 months ago
0
Error during annotateWithGeneParts during methylation annotation.

#207 desmodus1984 opened 11 months ago
0
readTranscriptFeatures default parameters

#206 TSolDour opened 1 year ago
0
AnnotationByFeature - get non-overlapping "pure" features // Granges

#205 bri2020 closed 2 years ago
1
BedGraph support

#204 fgualdr opened 2 years ago
0
Site upstream of transcription start site annotated as intronic

#203 pkothiyal opened 2 years ago
2
Error occured using annotateWithFeatures

#202 frylhc closed 2 years ago
2
output annotation meta columns

#201 shawpa opened 3 years ago
0
DNA methylation profile using genomation

#200 frylhc closed 3 years ago
1
problems concerning results produced by "annotateWithGeneParts" function

#199 frylhc closed 3 years ago
2
[Questions] is it possible to cbind ScoreMatrixBin results?

#198 alexyfyf closed 3 years ago
1
[Feature request] Keep all windows in the scoreMatrix

#197 balwierz opened 3 years ago
2
ScoreMatrix returns matrix with wrong dimensions

#196 balwierz opened 3 years ago
0
ScoreMatrix incorrectly removes valid windows

#195 balwierz opened 3 years ago
2
details of readTranscriptFeatures

#194 smcnew closed 4 years ago
2
readTranscriptFeatures invalid 'times' argument but chromosome names should be correct

#193 sformic closed 4 years ago
2
readTranscriptFeatures with GTF

#192 igordot opened 4 years ago
6
invalid class “ScoreMatrix” object

#191 LiyanJi-code opened 4 years ago
1
Error message in getTargetAnnotationStats

#190 abcosta opened 4 years ago
0
visualzation for RRBS data

#189 alexyfyf opened 4 years ago
0
readTranscriptFeatures - invalid times argument

#188 biakemi closed 5 years ago
5
Feature Request: Custom X-Axis

#187 ATpoint closed 5 years ago
1
extracting gene coordinates from AnnotationByGeneParts object

#186 ghost opened 5 years ago
2
readBed parsing failure

#185 socanas opened 5 years ago
8
scoreMatrixBin allocates 415 GB of RAM (1000 bins, 55,000 regions)

#184 balwierz opened 5 years ago
2
Closes #182

#183 katwre closed 5 years ago
0
Allow `[` on ScoreMatrixList by name

#182 balwierz opened 5 years ago
5
Bed file reading error with readTranscriptFeatures()

#181 gladiagit opened 5 years ago
7
Integrate DelayedArray framework into genomation

#180 katwre opened 5 years ago
0
Update README to use BiocManager

#179 katwre closed 4 years ago
1
list of score matrices not printed out correctly to terminal

#178 balwierz opened 6 years ago
0
[Feature req] allow heatMeta to produce no plots

#177 balwierz opened 6 years ago
0
ScoreMatrixBin() is.noCovNA = T produces all NA's when target is path to .bw file

#176 IngaPa closed 6 years ago
3
findFeatureComb with 1 element produces error

#175 frenkiboy opened 6 years ago
0
fixed ScoreMatrixBin() function for GRangesList objects

#174 bozmik closed 6 years ago
2
readTranscriptFeatures()

#173 likelet closed 6 years ago
1
C++ functions handle NAs

#172 bozmik closed 6 years ago
1
get Annotated data from "AnnotationByFeature" object

#171 likelet closed 6 years ago
2
character labels for ticks

#170 alexg9010 closed 6 years ago
1
Issue168

#169 katwre closed 6 years ago
1
ScorematrixBin returns all 1's when is.noCovNA=T

#168 IngaPa closed 6 years ago
1
bump up the version to 1.9.7

#167 bozmik closed 6 years ago
3
Ridiculous (and unstable) values returned by ScoreMatrixBin

#166 balwierz closed 6 years ago
17
C++ functions for scoreMatrixBin()

#165 bozmik closed 7 years ago
16