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BIMSBbioinfo / genomation

R package for genomic feature analysis and visualization
http://bioinformatics.mdc-berlin.de/genomation/
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add seqlengths argument to ScoreMatrixList and ScoreMatrix #87

Open frenkiboy opened 9 years ago

frenkiboy commented 9 years ago

When the targets are GRaneges, the resulting Rle can have different lengths, resulting in some windows being dropped in a certain set

al2na commented 9 years ago

I think this should be a additional feature, we shouldn't force users to have seqlengths in their GRanges objects. I guess we are on the same page on this, but wanted to make sure

On Mon, Mar 30, 2015 at 3:54 PM, frenkiboy notifications@github.com wrote:

When the targets are GRaneges, the resulting Rle can have different lengths, resulting in some windows being dropped in a certain set

— Reply to this email directly or view it on GitHub https://github.com/BIMSBbioinfo/genomation/issues/87.

frenkiboy commented 9 years ago

yeah yeah, it should be a provisional feature, not obligatory

On Mon, Mar 30, 2015 at 3:57 PM, al2na notifications@github.com wrote:

I think this should be a additional feature, we shouldn't force users to have seqlengths in their GRanges objects. I guess we are on the same page on this, but wanted to make sure

On Mon, Mar 30, 2015 at 3:54 PM, frenkiboy notifications@github.com wrote:

When the targets are GRaneges, the resulting Rle can have different lengths, resulting in some windows being dropped in a certain set

— Reply to this email directly or view it on GitHub https://github.com/BIMSBbioinfo/genomation/issues/87.

— Reply to this email directly or view it on GitHub https://github.com/BIMSBbioinfo/genomation/issues/87#issuecomment-87689702 .