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BIMSBbioinfo / ikarus

Identifying tumor cells at the single-cell level using machine learning
MIT License
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ContextualVersionConflict #7

Closed skr3178 closed 2 years ago

skr3178 commented 2 years ago

!python -m pip install git+https://github.com/BIMSBbioinfo/ikarus.git from ikarus import classifier, utils, data

ContextualVersionConflict: (pyarrow 6.0.1 (/usr/local/lib/python3.7/dist-packages), Requirement.parse('pyarrow<0.17.0,>=0.11.1'), {'ctxcore'})

dohmjan commented 2 years ago

Hi! Thank you for pointing that out. Were your trying to install ikarus from within google colab? The ContextualVersionConflict seems related. As described here you would have to install pyarrow in the correct version manually -- you already suggested that (#8, thank you!).

Outside colab, pip should take care of the pyarrow version as defined in ctxcore as long as one is using python<=3.8.

dohmjan commented 2 years ago

Due to an update in ctxcore this should be resolved in general. I'll close the issue for now. Can be opened again, if there are any questions.