NotImplementedError: "intersectBed" does not appear to be installed

BIMSBbioinfo / janggu

Deep learning infrastructure for genomics

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NotImplementedError: "intersectBed" does not appear to be installed #24

Closed starboyvarun closed 3 years ago

starboyvarun commented 3 years ago

thanks, @wkopp for solving the previous issue. I have installed bedtools still getting this error. Even, tried this command: import os from pybedtools import BedTool please can you tell me where I am going wrong this time? Thankyou.

starboyvarun commented 3 years ago

@rekado

rekado commented 3 years ago

Please don't ping me.

You don't have bedtools on the PATH. The PATH variable is how the shell --- and pybedtools --- discovers the individual bedtools executables at runtime.