BIMSBbioinfo / janggu

Deep learning infrastructure for genomics
GNU General Public License v3.0
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BAM support for single-cell data #3

Closed wkopp closed 5 years ago

wkopp commented 6 years ago

For single-cell datasets, reads also have an associated UMI or barcode that indicates the cell of origin. One way of storing the associated UMI for a read is via the RG tag in the bam file.

Through a new or adapted version of the bam_loader function, reads from single cell data could be handled.

wkopp commented 5 years ago

Stalled