For single-cell datasets, reads also have an associated UMI or barcode that indicates the cell of origin.
One way of storing the associated UMI for a read is via the RG tag in the bam file.
Through a new or adapted version of the bam_loader function, reads from single cell data could be handled.
wkopp
commented
5 years ago
For single-cell datasets, reads also have an associated UMI or barcode that indicates the cell of origin. One way of storing the associated UMI for a read is via the RG tag in the bam file.
Through a new or adapted version of the bam_loader function, reads from single cell data could be handled.