BIMSBbioinfo / janggu

Deep learning infrastructure for genomics
GNU General Public License v3.0
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Compatibility with Biopython #33

Open anikapatel999 opened 9 months ago

anikapatel999 commented 9 months ago

I am currently using Biopython version 1.77. When importing Janggu, I get the following error: ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a f ew cases, you may need to specify the molecule_type as an annotation on a SeqRecord for your script to work correctly. Please see http s://biopython.org/wiki/Alphabet for more information. Downgrading Biopython creates a conflict with Janggu. Do you have any recommendations on how to handle this? Thank you!!