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BIMSBbioinfo / janggu

Deep learning infrastructure for genomics
GNU General Public License v3.0
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README #7

Closed remomomo closed 5 years ago

remomomo commented 5 years ago

I was able to install it in a "fresh" conda environment following your instructions on the main page.

However, I had to make some adjustments. You don't appear to include matplotlib or scikit-learn as dependencies, so I had to install them manually (was getting an error for the proposed test later).

conda install tensorflow-gpu matplotlib scikit-learn

Did the trick.

after that there's a small mistake after you clone the repository and switch directories, the command should be

python ./src/examples/classify_fasta.py single

remomomo commented 5 years ago

also seaborn is missing actually (crashed once training was finished, during evaluation)

Edit: the test finishes after installing seaborn 👍

wkopp commented 5 years ago

Thanks, for pointing that out. I'll fix this in the next few days.