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BIMSBbioinfo / maui

Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
GNU General Public License v3.0
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fail to run the example code #11

Open wangqiqi1995 opened 2 years ago

wangqiqi1995 commented 2 years ago

when I run the code "time z = maui_model.fit_transform({'mRNA': gex, 'Mutations': mut, 'CNV': cnv})",I get the error : TypeError: compile() missing 1 required positional argument: 'loss' Could you know where the trouble is ?

jonathanronen commented 2 years ago

What versions of python, tensorflow, and keras are you using? The current version of maui is a bit finicky about versions..

wangqiqi1995 commented 2 years ago

I have read you versions in other issue, and change my packages versions to Keras 2.2.5 Keras-Applications 1.0.8 Keras-Preprocessing 1.1.2 maui-tools 0.1.95 tensorflow 1.14.0 Python 3.6.13 but I get the error : K.set_session(K.tf.Session(config=K.tf.ConfigProto(intra_op_parallelism_threads=1, inter_op_parallelism_threads=1))) AttributeError: module 'keras.backend' has no attribute 'tf' Could you give me some suggestion about versions?

jonathanronen commented 2 years ago

I think in the other issue I specified Keras==2.2.4. If you'd like to use 2.2.5 for whatever reason (please let me know if it works!), it doesn't have K.tf, so you'll have to use the tensorflow library directly to set the maximum number of threads. See https://www.tensorflow.org/versions/r1.15/api_docs/python/tf/config/threading