This branch almost completely solves Issue #138 (see comment there). At the very least it's an improvement upon the status quo in that respect, but if someone can suggest a change to move the samtools temp files there as well, that would be even better.
Notably, also, I've redefined the vim session handling, in order to avoid the constant change updates (I know that you weren't thrilled about that @rekado), so now it's just two files in /scripts/ (I couldn't find a "dev" folder anymore), and they define fold expressions that won't change nearly as frequently. Is this satisfactory?
This branch almost completely solves Issue #138 (see comment there). At the very least it's an improvement upon the status quo in that respect, but if someone can suggest a change to move the samtools temp files there as well, that would be even better.
Notably, also, I've redefined the vim session handling, in order to avoid the constant change updates (I know that you weren't thrilled about that @rekado), so now it's just two files in
/scripts/(I couldn't find a "dev" folder anymore), and they define fold expressions that won't change nearly as frequently. Is this satisfactory?