BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports
https://bioinformatics.mdc-berlin.de/pigx/
GNU General Public License v3.0
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Error message from "guix install pigx-bsseq" #144

Closed xie186 closed 5 years ago

xie186 commented 5 years ago

When I run guix install pigx-bsseq, it failed and gave the error message below:

guix install: warning: Consider running '' followed by
'guix package -u' to get up-to-date packages and security updates.

substitute: /gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
substitute: /gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
/gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
/gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
building /gnu/store/sp947xhp8dqfzn3zd2m0aq4ia5qvklbl-python2-2.7.15.drv...
updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
building /gnu/store/gi51ds4pry7lh290yxji6q7wr4n1gkwm-curl-7.64.0.tar.xz.drv...
/gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
/gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
downloading from https://curl.haxx.se/download/curl-7.64.0.tar.xz...
building /gnu/store/zzdj2has6mpw2g0ipbyxv678q9kk55ld-CUnit-2.1-3.tar.bz2.drv...
|builder for `/gnu/store/zzdj2has6mpw2g0ipbyxv678q9kk55ld-CUnit-2.1-3.tar.bz2.drv' failed with exit code 127
build of /gnu/store/zzdj2has6mpw2g0ipbyxv678q9kk55ld-CUnit-2.1-3.tar.bz2.drv failed
View build log at '/var/log/guix/drvs/zz/dj2has6mpw2g0ipbyxv678q9kk55ld-CUnit-2.1-3.tar.bz2.drv.bz2'.
building /gnu/store/6hbgb2hqmi892vzxp8qn9j7i30h5hskq-Linux-PAM-1.2.1.tar.bz2.drv...
cannot build derivation `/gnu/store/4gcvh42zqrg2d5pkfv5zl6vrlc17xcrk-cunit-2.1-3.drv': 1 dependencies couldn't be built
cannot build derivation `/gnu/store/qkc5f246xxsnlw1qlc6b5bn8z23ylfyl-nghttp2-1.35.1.drv': 1 dependencies couldn't be built
cannot build derivation `/gnu/store/nx3y5ihv9ypa6bg3c8w0gjl80wd8ga0w-curl-7.64.0.drv': 1 dependencies couldn't be built
guix install: error: build of `/gnu/store/nx3y5ihv9ypa6bg3c8w0gjl80wd8ga0w-curl-7.64.0.drv' failed

Linux system: 14.04.1-Ubuntu

rekado commented 5 years ago

It looks like you're building everything from source, which is going to take a long time and may require more resources. I'm guessing that you did not authorize the default substitute server which provides binaries. The installer script offers you a choice there.

See https://guix.gnu.org/manual/en/html_node/Substitutes.html for more info on binary substitutes.

I recommend getting in touch with the Guix community through either the help-guix@gnu.org mailing list or the IRC channel: https://guix.gnu.org/help/

xie186 commented 4 years ago

Thank you.