Closed alexg9010 closed 4 years ago
somehow only two files can be processed in parallel ... have to investigate this
sambamba markdup has too many problems right now that require too much run-specific debugging https://github.com/biod/sambamba/issues/229 https://github.com/biod/sambamba/issues/189
Will use samblaster instead.
addresses https://github.com/BIMSBbioinfo/pigx_bsseq/issues/153 too
compatible to picard: https://lomereiter.github.io/sambamba/docs/sambamba-markdup.html direct sorting : https://github.com/biod/sambamba/issues/183