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BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports
https://bioinformatics.mdc-berlin.de/pigx/
GNU General Public License v3.0
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reduce number of final bam files #153

Open alexg9010 opened 5 years ago

alexg9010 commented 5 years ago

ideas: [ ] bwa-meth it would make sense to directly sort the output of the aligner (-1 BAM) [ ] run picard or whatever deduplication tool to only mark duplicates on sorted file