Fix case where target=posttrim-qc

BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports

https://bioinformatics.mdc-berlin.de/pigx/

GNU General Public License v3.0

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Fix case where target=posttrim-qc #162

Closed Blosberg closed 3 years ago

Blosberg commented 4 years ago

In cases where target=posttrim-qc (not upstream of final-reports in DAG) the pipeline would break without the html output being satisfied. Now it is supplied explicitly

alexg9010 commented 4 years ago

Hi @Blosberg

The problem was actually that I forgot to update the output specification of the posttrim-qc rule in func_defs.py (https://github.com/BIMSBbioinfo/pigx_bsseq/blob/master/scripts/func_defs.py#L216-L222).

Earlier I cut down the output of rawqc and posttrim-qc to only the zip file, as this was the only required input for multiqc in the end.

Your error should be fixed with d24d9851d4834a9f622eec66e27631a09dabd58c

Best, Alex