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BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports
https://bioinformatics.mdc-berlin.de/pigx/
GNU General Public License v3.0
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evaluate switch from trim galore to fastp read trimming #171

Open alexg9010 opened 3 years ago

alexg9010 commented 3 years ago

seems to work

https://robertslab.github.io/sams-notebook/2020/03/06/TrimmingMultiQC-Methcompare-Bisulfite-FastQs-with-fastp-on-Mox.html

alexg9010 commented 3 years ago

this would remove fastqc aswell