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BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports
https://bioinformatics.mdc-berlin.de/pigx/
GNU General Public License v3.0
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if diffmeth section is commented out, leads to error #172

Open alexg9010 opened 2 years ago

alexg9010 commented 2 years ago 
KeyError in line 473 of /gnu/store/5chhbgr3b4jib88iqlmwv89z77pxmbyk-pigx-bsseq-0.1.5/libexec/pigx_bsseq/scripts/func_defs.py:
'DManalyses'
  File "/gnu/store/5chhbgr3b4jib88iqlmwv89z77pxmbyk-pigx-bsseq-0.1.5/libexec/pigx_bsseq/snakefile.py", line 199, in <module>
  File "/gnu/store/5chhbgr3b4jib88iqlmwv89z77pxmbyk-pigx-bsseq-0.1.5/libexec/pigx_bsseq/scripts/func_defs.py", line 473, in files_for_treatment

https://github.com/BIMSBbioinfo/pigx_bsseq/blob/1d594110254cd3dd82190c4a30448a60161a540c/snakefile.py#L199

alexg9010 commented 2 years ago

solution for now is to keep an empty 'DManalyses' section.