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BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports
https://bioinformatics.mdc-berlin.de/pigx/
GNU General Public License v3.0
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allow users to fetch other ucsc gene prediction tables #178

Open alexg9010 opened 2 years ago

alexg9010 commented 2 years ago

right now we are enforcing knownGene, but if we use webfetch from UCSC directly, other tables should be possible, i.e. refGene ...

https://github.com/BIMSBbioinfo/pigx_bsseq/blob/11f4260c27be65a44324ca64e4bc9afd373a6748/scripts/fetch_procedures.R#L117