[..]
differential-methylation:
cores: 1
qvalue: 0.01
difference: 25
annotation:
cpgIsland-bedfile: ''
refGenes-bedfile: ''
# download cpgIsland-bedfile or refGenes-bedfile automatically if not given?
webfetch: no
[..]
Error Log:
|..................................................... | 76%
Quitting from lines 289-296 (index.Rmd)
Error in lookupBedFile(type = "refGene", filename = refGenes_bedfile, :
ERROR: type can be either "cpgIslandExt" or "knownGene".
Calls: render2HTML ... eval_with_user_handlers -> eval -> eval -> lookupBedFile
settings:
Error Log: