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BIMSBbioinfo / pigx_bsseq

bisulfite sequencing pipeline from fastq to methylation reports
https://bioinformatics.mdc-berlin.de/pigx/
GNU General Public License v3.0
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Add command line option to select rules #45

Closed rekado closed 6 years ago

rekado commented 6 years ago

The rules to be evaluated are fixed here: https://github.com/BIMSBbioinfo/pigx_bsseq/blob/master/BSseq_pipeline.py#L127

We always default to the final-report rule. A user should be able to select a different target rule (or set of rules) on the command line.