diffmeth.report.utf8.md does not exist

[Blosberg]

Probably another file-latency problem: a file cannot be found, and I'm guessing it's an intermediate file involved in the final report, and that when it gets created, it doesn't get found quickly enough on the file server. That's just my speculation. The actual error data is below:

Upon cluster submission, I get the following:

Job 4: Compiling Final Report:
   report    : /home/bosberg/projects/pigx_bsseq_testing/test_basic/test/out/Final_Report/SEsample_v2_se_bt2.deduped.sorted_hg19_final.nb.html

Submitted job 4 with external jobid 'Your job 2391641 ("snakejob.final_report.4.sh") has been submitted'.
Error in rule final_report:
    jobid: 4
    output: /home/bosberg/projects/pigx_bsseq_testing/test_basic/test/out/Final_Report/SEsample_v2_se_bt2.deduped.sorted_hg19_final.nb.html
    log: /home/bosberg/projects/pigx_bsseq_testing/test_basic/test/out/Final_Report/SEsample_v2_se_bt2.deduped.sorted_hg19_final.log
    cluster_jobid: Your job 2391641 ("snakejob.final_report.4.sh") has been submitted

Will exit after finishing currently running jobs.
Exiting because a job execution failed. Look above for error message

And then checking the log file:

$ tail test/out/Final_Report/SEsample_v2_se_bt2.deduped.sorted_hg19_final.log

 Rendering report: SEsample_v2_se_bt2.deduped.sorted_hg19_final.nb.html 
 into directory: /home/bosberg/projects/pigx_bsseq_testing/test_basic/test/out/Final_Report 

Error in file(con, "r") : cannot open the connection
Calls: render2multireport ... mapply -> <Anonymous> -> <Anonymous> -> readLines -> file
In addition: Warning message:
In file(con, "r") :
  cannot open file '/home/bosberg/projects/pigx_bsseq_testing/test_basic/test/out/Final_Report/0_1/diffmeth.report.utf8.md': No such file or directory
Execution halted

[Blosberg]

tentatively "fixed" with new version of snakemake.