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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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make distcheck fails #12

Closed Blosberg closed 6 years ago

Blosberg commented 6 years ago

Quoting Bora from Slack:

make distcheck fails all of them very quickly, because it is missing some data that is part of the repository.


cp: cannot stat '/data/local/buyar/pigx/pigx_rnaseq/pigx_rnaseq-0.0.1/_build/../tests/sample_data/preprocessed/salmon_output': No such file or directory
cp: cannot stat '/data/local/buyar/pigx/pigx_rnaseq/pigx_rnaseq-0.0.1/_build/../tests/sample_data/preprocessed/colData.tsv': No such file or directory
mktemp: failed to create file via template '/data/local/buyar/pigx/pigx_rnaseq/pigx_rnaseq-0.0.1/_build/../tests/settings.tmp.XXXX.yaml': Permission denied```

> `sample_data/preprocessed` folder is not created at distcheck.

> also, there is a permission issue for creating a file under /data/local/buyar/pigx/pigx_rnaseq/pigx_rnaseq-0.0.1/tests/
rekado commented 6 years ago

Fixed in master since commit 6ac3781d9ad7cf313196e1a41b913b328108f384.