label: run_deseq2
design formula:~ sex + age + AnalysisGroup
Quitting from lines 148-192 (deseqReport.Rmd)
Error in DESeqDataSet(se, design = design, ignoreRank) :
all variables in design formula must be columns in colData
Calls: runReport ... withVisible -> eval -> eval -> <Anonymous> -> DESeqDataSet
Execution halted
In my case, the case sensitivity triggered the error. I know, it is trivial, but I find that this is not so very easy to find in snakemake and the extra check would be nice so one can start the job and leave it for the night with a bit more of a confidence.
Hello,
In my case, the case sensitivity triggered the error. I know, it is trivial, but I find that this is not so very easy to find in snakemake and the extra check would be nice so one can start the job and leave it for the night with a bit more of a confidence.
Many thanks! Steffen