Open alexg9010 opened 2 months ago
That's exactly right. That's what we're doing in the Guix package:
https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/bioinformatics.scm#n15615
What is the recommended fix then? Should we regard this as an edge case for guix-based development and recommend exporting manually via export PYTHONPATH=$GUIX_PYTHONPATH
before the ./configure
step?
On the cluster enter guix environment and build pipeline
summary output
Start pipeline:
This causes error when starting the pipeline on the cluster:
check qsub_template
A fix would be to use the PYTHONPATH provided by guix: