These are some of the changes that we found necessary for using PiGx RNAseq with Tibanna. make distcheck passes.
While these changes include tar-wrapping for salmon rules, they do not include the same for STAR rules. In both cases the scripts access the whole directory instead of just a single file. We use tar to add the whole directory as an input. This complicates the script somewhat as the tar archive needs to be unpacked before use.
It's possible that more changes are necessary, but we haven't tested this variant with Tibanna yet.
These are some of the changes that we found necessary for using PiGx RNAseq with Tibanna.
make distcheckpasses.While these changes include tar-wrapping for salmon rules, they do not include the same for STAR rules. In both cases the scripts access the whole directory instead of just a single file. We use tar to add the whole directory as an input. This complicates the script somewhat as the tar archive needs to be unpacked before use.
It's possible that more changes are necessary, but we haven't tested this variant with Tibanna yet.