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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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replace bamCoverage with bedtools genomecov #19

Closed borauyar closed 6 years ago

borauyar commented 6 years ago

@rekado @jonathanronen with these changes, we can switch to bedtools-based genome coverage computation from the previously non-functioning deeptools-based bamCoverage approach.