Pipeline does not work with unzipped input files

BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

GNU General Public License v3.0

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Closed frenkiboy closed 3 years ago

frenkiboy commented 5 years ago

The pipeline breaks on the trimming step when the input files are unzipped

borauyar commented 3 years ago

trim_galore has been replaced with fastp (See https://github.com/BIMSBbioinfo/pigx_rnaseq/commit/335778130d3528083e99e4c894331e34f9252cc9), which can work with both compressed and uncompressed files