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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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Missing conda environment.yml file #53

Closed fhorvat closed 5 years ago

fhorvat commented 5 years ago

I tried to install pipeline though Conda using provided instuctions, but the enviornment.yml file is missing from git repo

borauyar commented 5 years ago

Hi @fhorvat. Sorry for the late response. Actually, you are misguided by our documentation as I was supposed to remove the section about how to install the pipeline via Conda. We highly recommend using Guix if possible. Otherwise, it might be better to use the 'requirements.txt' file to create a new environment with the dependencies of the pipeline. However, we may not be able to provide much support on the Conda related issues.

borauyar commented 5 years ago

https://github.com/BIMSBbioinfo/pigx_rnaseq/commit/7d211c9f24af840adec9f9fe07150790e008e65f