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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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export bigwig files rather than bedgraph files #54

Closed borauyar closed 5 years ago

borauyar commented 5 years ago

The pipeline currently produces bedgraph files for coverage tracks but it is not an ideal solution. It is better to produce bigwig files which are lightweight and also removes dependency on bedtools.

frenkiboy commented 5 years ago

I've already made this change in my local repo - will commit this week.

On Wed, Jun 12, 2019 at 10:24 AM Bora Uyar notifications@github.com wrote:

The pipeline currently produces bedgraph files for coverage tracks but it is not an ideal solution. It is better to produce bigwig files which are lightweight and also removes dependency on bedtools.

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borauyar commented 5 years ago

Sorry I forgot abou that. I already did this. I am about to make a new release. So please wait :)