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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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split STAR index and STAR map arguments and expose arguments in settings #55

Closed borauyar closed 5 years ago

borauyar commented 5 years ago

Currently STAR_EXEC is evaluated the same way for star_index and star_map, that's why a lot of the arguments are hard-coded. To expose these arguments to the user the STAR_EXEC has to be evaluated differently for indexing and mapping options.