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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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apply fastqc on fastq files before/after trimming #57

Closed borauyar closed 3 years ago

borauyar commented 5 years ago

currently, fastqc is applied on alignment files, which are based on the quality improved read files. However, users are interested in quality reports before any processing is done on the reads. So, a quality report before/after quality improvement would be needed. And this should be applied on read files rather than on aligned reads.

borauyar commented 3 years ago

From version 0.0.13, fastqc is replaced by fastp, which does QC reports before/after read trimming.