BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
21 stars 12 forks source link

tximport not listed as requirement #59

Closed smoe closed 5 years ago

smoe commented 5 years ago

Hello,

The configuration tests for tximport

dh_auto_configure: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking returned exit code 1
make: *** [debian/rules:15: binary] Error 255
$ grep error config.log
configure:4314: error: R package tximport not found.

but nothing alike is found as a requirement.txt

<empty grep not shown>

Cheers, Steffen

borauyar commented 5 years ago

@smoe Thank you for letting us know. I updated the requirements file.