make salmon count optional

BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline

GNU General Public License v3.0

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make salmon count optional #65

Closed frenkiboy closed 3 years ago

borauyar commented 3 years ago

When the pipeline is run with target "--target deseq_report_star", salmon-based counts/reports are not generated pigx-rnaseq -s tests/settings.yaml --target deseq_report_star tests/sample_sheet.csv