Open alexg9010 opened 3 years ago
When specifying multiple targets and some of the values have an additional space, the pipeline call fails
pigx-rnaseq -s tests/settings.yaml tests/sample_sheet.csv \ --target={deseq_report_salmon_transcripts, deseq_report_salmon_genes} \ --force -n
usage: pigx-rnaseq [-h] [-v] (--init [{settings,sample-sheet,both}] | -s SETTINGS) [-c CONFIGFILE] [--target TARGET] [-n] [--graph GRAPH] [--force] [--reason] [--unlock] [sample_sheet] pigx-rnaseq: error: unrecognized arguments: deseq_report_salmon_genes}
works without problems when space is removed:
pigx-rnaseq -s tests/settings.yaml tests/sample_sheet.csv \ --target=deseq_report_salmon_transcripts,deseq_report_salmon_genes} \ --force -n
When specifying multiple targets and some of the values have an additional space, the pipeline call fails