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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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Replace trimgalore with bbtrim #89

Closed frenkiboy closed 3 years ago

frenkiboy commented 3 years ago

Trimgalore should be replaced with a lightweight trimming tool - bbtrim https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbduk-guide/

borauyar commented 3 years ago

https://github.com/BIMSBbioinfo/pigx_rnaseq/issues/95

borauyar commented 3 years ago

trim galore + fastqc are replaced with fastp in release v0.0.13 https://github.com/BIMSBbioinfo/pigx_rnaseq/releases/tag/v0.0.13