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BIMSBbioinfo / pigx_rnaseq

Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
GNU General Public License v3.0
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add snakemake resources + memory requirements per rule #97

Closed rekado closed 3 years ago

rekado commented 3 years ago

Let's rebase and merge this. It's perhaps a little crude, and having a fixed memory hint for each rule independent of file size may be a little inflexible, but this already helps a lot with execution on smaller systems.

rekado commented 3 years ago

Since trimming has changed it would be good to pick a memory limit for fastp.