Write tests and create more robust and maintainable architecture

BIMSBbioinfo / pigx_sars-cov-2

PiGx SARS-CoV-2 wastewater sequencing pipeline

GNU General Public License v3.0

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Write tests and create more robust and maintainable architecture #67

Open vicfabienne opened 3 years ago

vicfabienne commented 3 years ago

Most of the scripts need tests. For further information contact @rekado

Also, there is a lot of processing currently done within the rmd reports which should be moved to individual files.

rekado commented 3 years ago

These two parts are linked: in order to simplify the tests we should move most processing out of the Rmd files and into scripts (or libraries). Once that's done we can test those scripts or libraries without having to process rmarkdown.

rekado commented 3 years ago

One of the issues relating to moving code out of Rmd files is #19