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BIMSBbioinfo
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pigx_scrnaseq
Pipeline for analysis of Dropseq single cell data
http://bioinformatics.mdc-berlin.de/pigx
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Refactorized Dropseq.sh into snakemake rules - NOT TESTED
#14
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frenkiboy
closed
6 years ago
frenkiboy
commented
6 years ago
Snake_Dropseq.py:
addition of rules for going from the fastq to tagged bam file
all files are marked as temporary
Accessory_Functions.py:
java_tool - function which creates the call to the java application
Snake_Dropseq.py:
Accessory_Functions.py: