BIMSBbioinfo / pigx_scrnaseq

Pipeline for analysis of Dropseq single cell data
http://bioinformatics.mdc-berlin.de/pigx
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Log file output not going through on SM jobs on the cluster #22

Open Blosberg opened 6 years ago

Blosberg commented 6 years ago

Currently when jobs crash after cluster submission, nothing is printed to the log files, rather we need to fish for the execution command and submit it manually before the file can be read. We should figure out why

First question should be whether the same jobs print logs on local submission