Status of implemented features - Githubissues

BIO-DIKU / SeqScan

Pattern matching in biological sequences

GNU General Public License v2.0

4 stars 0 forks source link

Status of implemented features #111

Open maasha opened 8 years ago

maasha commented 8 years ago

Options and functionality implemented:

[x] -h --help
[x] -p --pattern
[x] -P --pattern_file
[ ] -c --complement <forward|reverse|both>
[ ] -d --direction <forward|reverse>
[ ] -s --start
[ ] -e --end .
[ ] -t --threads
[ ] -E --score_encoding <Phred33|Phred64>
[ ] -S --score_min
[ ] -a --ambiguate
[x] -m --match_type
[x] -M --match_file
[ ] -o --output
[ ] -O --overlap
[ ] -f --filter
[x] -v --version
[x] -V --verbose

Extras:

[ ] reading of FASTQ files
[ ] reading of Zipped files