BIO-DIKU / SeqScan

Pattern matching in biological sequences
GNU General Public License v2.0
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added magic option to OptParse #76

Closed maasha closed 8 years ago

maasha commented 8 years ago

This is a developers only option hidden from users - to it is undocumented. It will be used for signalling at runtime which algorithm to be used:

seqscan -p "atcg" --magic "TNFA" seqfile.fna

or

seqscan -p "atcg" -X "TNFA" seqfile.fna

For the moment there is noone responding to "TNFA" but there will be.

Fixes #72

Safe to merge.