BIO-DIKU klust issues - Githubissues

BIO-DIKU / klust

Efficient DNA/RNA sequence clustering using *k*-mers as an approximation for sequence similarity.

GNU General Public License v2.0

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KmerComparison and small changes to InterfaceCompare

#65 ahovgaard closed 8 years ago
0
Use BioIO SeqEntry

#64 ahovgaard closed 8 years ago
0
Linking with BioIO SeqEntry not working

#63 ahovgaard closed 8 years ago
4
Clone and build BioIO

#62 AndreasDahl closed 8 years ago
2
Revert "clone and build BioIO"

#61 maasha closed 8 years ago
1
clone and build BioIO

#60 AndreasDahl closed 8 years ago
3
Clustering Implementation

#59 AndreasDahl opened 8 years ago
0
More levenshtein tests

#58 AndreasDahl closed 8 years ago
0
Use BioIO in klust

#57 ahovgaard closed 8 years ago
2
Introduce the use of C++ mocks for testing

#56 maasha opened 8 years ago
0
KmerCollection bug-fix, step-size, and tests.

#55 Chrikomu closed 8 years ago
3
locally include catch.hpp in tests

#54 AndreasDahl closed 8 years ago
0
cleanup levenshtein and fix cpplint warnings

#53 AndreasDahl closed 8 years ago
2
Problems with the linking of klust-test?

#52 ahovgaard opened 8 years ago
0
Travis integration

#51 AndreasDahl closed 8 years ago
3
Header guard

#50 maasha closed 8 years ago
0
'less' testing of KmerCollection

#49 ahovgaard closed 8 years ago
0
Less testing of KmerCollection

#48 maasha closed 8 years ago
4
More testing of KmerCollection

#47 ahovgaard closed 8 years ago
2
Seq entry

#46 ahovgaard closed 9 years ago
1
Header guards: KLUST_<file>_H_ vs. SRC_<file>_H_ ?

#45 ahovgaard closed 8 years ago
5
Cleanup Levenshtein class code

#44 AndreasDahl closed 8 years ago
0
Distance matrix benchmark

#43 AndreasDahl opened 9 years ago
0
handle catch.hpp as local file

#42 AndreasDahl closed 8 years ago
1
option parsing into separate file from main to enable testing with catch

#41 AndreasDahl opened 9 years ago
0
Centroid class

#40 AndreasDahl opened 9 years ago
1
First Kmer clustering

#39 AndreasDahl opened 9 years ago
0
Proper Fasta class

#38 AndreasDahl closed 8 years ago
3
Add bitset to kmerCollection

#37 AndreasDahl opened 9 years ago
0
Kmercollection

#36 Chrikomu closed 9 years ago
4
fixed uninitialized loop variable and changed to using size_t types

#35 ahovgaard closed 9 years ago
0
Benchmark

#34 AndreasDahl closed 9 years ago
8
Upload mock dataset to benchmark folder

#33 maasha closed 9 years ago
0
Optparser stuff

#32 maasha closed 9 years ago
0
Benchmark

#31 maasha closed 9 years ago
2
changed everything to 2 space indentation as per the Google style guide

#30 ahovgaard closed 9 years ago
0
Print proper usage guide

#29 AndreasDahl closed 9 years ago
0
Update readme to match internal document

#28 AndreasDahl closed 9 years ago
0
rename executable to klust

#27 AndreasDahl closed 9 years ago
0
Create benchmark dir

#26 maasha opened 9 years ago
2
Replace magic constant exists values with proper values

#25 AndreasDahl closed 9 years ago
0
Kmer gen1

#24 Chrikomu closed 9 years ago
0
add catch.hpp to project

#23 AndreasDahl closed 9 years ago
0
Unit Tests for getoptlong option parsing

#22 maasha opened 9 years ago
1
Seq leven

#21 Chrikomu closed 9 years ago
1
Use soft tabs and 2 space indentation

#20 maasha closed 9 years ago
1
Use standard integer types

#19 maasha opened 9 years ago
0
Use EXIT_SUCCESS and EXIT_FAILURE

#18 maasha closed 9 years ago
0
Update usage output

#17 maasha closed 9 years ago
0
Rename executable

#16 maasha closed 9 years ago
0