BIOP EasyXT-FIJI issues

BIOP / EasyXT-FIJI

Commands and Classes for interfacing between Imaris and Fiji

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issues

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filter does not work with intensities

#59 romainGuiet opened 4 months ago
1
Update EasyXT.java to solve issue with filter on intensities

#58 romainGuiet closed 4 months ago
0
EasyXT.Dataset.addChannels() convert instead of making a copy

#57 romainGuiet opened 10 months ago
0
adds celldemo_FindMaxima_makeSpots.groovy

#56 romainGuiet closed 1 year ago
0
bring back resetImarisConnection()

#55 romainGuiet closed 1 year ago
0
Surfaces fix

#54 lacan closed 1 year ago
0
Origin in ImageCalibration should be in pixel, not in micrometer

#53 NicoKiaru opened 1 year ago
0
Imaris 10 compatibility and label images (inc. version bump)

#52 lacan closed 1 year ago
2
Migrate to Imaris 9.9 and update update site.

#51 NicoKiaru opened 2 years ago
0
CI: cache ~/.m2/repository correctly

#50 ctrueden closed 2 years ago
0
What the clipping plane !

#49 romainGuiet opened 2 years ago
0
Better results

#48 lacan closed 2 years ago
0
fixes warning and increase voxel count to 3

#47 romainGuiet closed 2 years ago
0
to solve issue with openImage()

#46 romainGuiet closed 2 years ago
0
openImage() bugs if ims file has (or not) objects (surfaces/spots)

#45 romainGuiet opened 2 years ago
0
Migrate Label Image Creation when Imaris 9.9 comes out

#44 lacan opened 2 years ago
0
Duplicates part MorphoLibJ waiting for release

#43 romainGuiet closed 2 years ago
0
changes MorphoLibJ version

#42 romainGuiet closed 2 years ago
0
adds a dependency to MorpholibJ to simplify and debug EasyXT.Surfaces.createFromLabels()

#41 romainGuiet closed 2 years ago
0
Look at timepoint issue

#40 NicoKiaru opened 2 years ago
0
Issue with 2D images from Imaris

#39 lguerard closed 2 years ago
9
Filter surfaces from label

#38 romainGuiet closed 3 years ago
0
make EasyXT.Surfaces.getLabelsImage() use IDs

#37 romainGuiet opened 3 years ago
0
modifies pom for dependency to mcib3d-plugins

#36 romainGuiet closed 3 years ago
0
Tracking Issue

#35 romainGuiet opened 3 years ago
1
Demo scripts

#34 romainGuiet closed 3 years ago
0
Track stuff

#33 romainGuiet closed 3 years ago
0
Demo scripts

#32 romainGuiet closed 3 years ago
0
Surfaces.getLabelsImage() is no longer a label because of ImageConverter

#31 romainGuiet closed 3 years ago
2
adds a new function to create Surfaces from a Label image.

#30 romainGuiet closed 3 years ago
0
SpotsDetector parameters not being validated correctly

#29 lacan opened 3 years ago
3
Easyxt Overhaul

#28 lacan closed 3 years ago
2
adds getSurfacesLabel()

#27 romainGuiet closed 3 years ago
0
EasyXT.getSpotsMask returns ImagePlus only 16-bit

#26 romainGuiet opened 3 years ago
1
Get Spots Images, Mask or Label!

#25 romainGuiet closed 3 years ago
1
Adds Detect Elliptic spot

#24 romainGuiet closed 3 years ago
0
adding Ellipses detection

#23 romainGuiet closed 3 years ago
0
Rom1 dev

#22 romainGuiet closed 3 years ago
1
Fix dependencies, adds demo test, fix error in AllGetters demo

#21 NicoKiaru closed 3 years ago
1
Filter Spots

#20 tischi opened 3 years ago
3
Filters API change suggestion

#19 tischi opened 3 years ago
2
Channel Index API change suggestion

#18 tischi opened 3 years ago
2
Compute Shortest Distance to Other Objects

#17 tischi opened 3 years ago
5
Add Child to Scene Index

#16 tischi closed 3 years ago
1
String aSurfaceFiltersString;

#15 tischi closed 3 years ago
9
SpotsDetector : add the minimal amount of parameters in the builder initialization

#14 NicoKiaru opened 4 years ago
0
Improve self-contained demos

#13 NicoKiaru opened 4 years ago
0
Self contained demos

#12 NicoKiaru closed 4 years ago
1
setSurfaceMask only set the mask of the first timepoint

#11 NicoKiaru opened 4 years ago
0
Results not ordered

#10 NicoKiaru closed 4 years ago
1