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BIOP / abba_python

ABBA, controlled from python
BSD 3-Clause "New" or "Revised" License
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Why I can't open imagej by anaconda #20

Open Monodia97 opened 1 month ago

Monodia97 commented 1 month ago

Description

I opened anaconda prompt and run the following commands `mamba create -c conda-forge -n abba-env python=3.8 openjdk=8 pip maven pyimagej

conda activate abba-env

pip install abba_python

from abba_python import abba

abba.start_imagej()`

Then I waited but nothing happened

NicoKiaru commented 1 month ago

So on the first start there's really a lot of jar files which are downloaded from the web. This may take a while (maybe around 5 minutes ?). Do you see some network activity going on ?

After that everything is cached so it should start much much faster.

If you use the windows installer (https://github.com/BIOP/ijp-imagetoatlas/releases/) there will be a conda env installed (that will be listed in conda env list), where most of the jars are already present, which will make the first startup much faster.