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BLLIP / bllip-parser

BLLIP reranking parser (also known as Charniak-Johnson parser, Charniak parser, Brown reranking parser) See http://pypi.python.org/pypi/bllipparser/ for Python module.
http://bllip.cs.brown.edu/
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pip install errors on linux (requires installing gcc & gxx) #67

Open MaxGhenis opened 4 years ago

MaxGhenis commented 4 years ago

When installing bllip-parser from Ubuntu via pip (pip install bllipparser), I got Building wheel for bllipparser (setup.py) ... error.

Per this article, installing these in advance got it working:

conda install gcc_linux-64
conda install gxx_linux-64

May be worth adding to an installation piece of a README.

Full error:

(base) mghenis@penguin:~/NegBio$ pip install bllipparser                                                                  
Collecting bllipparser                                                                                                    
  Using cached bllipparser-2016.9.11.tar.gz (555 kB)                                                                      
Requirement already satisfied: six in /home/mghenis/anaconda3/lib/python3.7/site-packages (from bllipparser) (1.14.0)     
Building wheels for collected packages: bllipparser                                                                       
  Building wheel for bllipparser (setup.py) ... error                                                                    
  ERROR: Command errored out with exit status 1: 
   command: /home/mghenis/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-instal
l-p8m15xws/bllipparser/setup.py'"'"'; __file__='"'"'/tmp/pip-install-p8m15xws/bllipparser/setup.py'"'"';f=getattr(tokenize
, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file_
_, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-13eymyau                                                              
       cwd: /tmp/pip-install-p8m15xws/bllipparser/                                                                       
  Complete output (24 lines):                                                                                            
  running bdist_wheel                                                               
  running build                                                                                  
  running build_py                                                                 
  creating build                                                                           
  creating build/lib.linux-x86_64-3.7                                                                                     
  creating build/lib.linux-x86_64-3.7/bllipparser                                       
  copying python/bllipparser/__main__.py -> build/lib.linux-x86_64-3.7/bllipparser         
  copying python/bllipparser/RerankerFeatureCorpus.py -> build/lib.linux-x86_64-3.7/bllipparser                           
  copying python/bllipparser/Utility.py -> build/lib.linux-x86_64-3.7/bllipparser         
  copying python/bllipparser/JohnsonReranker.py -> build/lib.linux-x86_64-3.7/bllipparser
  copying python/bllipparser/__init__.py -> build/lib.linux-x86_64-3.7/bllipparser                                       
  copying python/bllipparser/ParsingShell.py -> build/lib.linux-x86_64-3.7/bllipparser                                    
  copying python/bllipparser/RerankingParser.py -> build/lib.linux-x86_64-3.7/bllipparser                                
  copying python/bllipparser/ModelFetcher.py -> build/lib.linux-x86_64-3.7/bllipparser                                    
  copying python/bllipparser/CharniakParser.py -> build/lib.linux-x86_64-3.7/bllipparser
  running build_ext                                                                                                       
  building 'bllipparser._CharniakParser' extension                                                                        
  creating build/temp.linux-x86_64-3.7                                                                                    
  creating build/temp.linux-x86_64-3.7/first-stage                                                                        
  creating build/temp.linux-x86_64-3.7/first-stage/PARSE                                                                  
  creating build/temp.linux-x86_64-3.7/first-stage/PARSE/swig                                                             
  /home/mghenis/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall 
-Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march
=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ft
ree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/mghenis/anaconda3/inclu
de -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/mghenis/anaconda3/include -fPIC -Ifirst-stage/PARSE/ -I/home/mghenis/an
aconda3/include/python3.7m -c first-stage/PARSE/swig/wrapper.C -o build/temp.linux-x86_64-3.7/first-stage/PARSE/swig/wrapp
er.o                                                                                                                      
  x86_64-conda_cos6-linux-gnu-cc: error trying to exec 'cc1plus': execvp: No such file or directory                       
  error: command '/home/mghenis/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1                   
  ----------------------------------------
  ERROR: Failed building wheel for bllipparser             
  Running setup.py clean for bllipparser                 
Failed to build bllipparser                                    
Installing collected packages: bllipparser
    Running setup.py install for bllipparser ... error            
    ERROR: Command errored out with exit status 1:
     command: /home/mghenis/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-inst
all-p8m15xws/bllipparser/setup.py'"'"'; __file__='"'"'/tmp/pip-install-p8m15xws/bllipparser/setup.py'"'"';f=getattr(tokeni
ze, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __fil
e__, '"'"'exec'"'"'))' install --record /tmp/pip-record-oznoxqhp/install-record.txt --single-version-externally-managed --
compile --install-headers /home/mghenis/anaconda3/include/python3.7m/bllipparser
         cwd: /tmp/pip-install-p8m15xws/bllipparser/
    Complete output (24 lines):
    running install
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.7
    creating build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/__main__.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/RerankerFeatureCorpus.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/Utility.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/JohnsonReranker.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/__init__.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/ParsingShell.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/RerankingParser.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/ModelFetcher.py -> build/lib.linux-x86_64-3.7/bllipparser
    copying python/bllipparser/CharniakParser.py -> build/lib.linux-x86_64-3.7/bllipparser
    running build_ext
    building 'bllipparser._CharniakParser' extension
    creating build/temp.linux-x86_64-3.7
    creating build/temp.linux-x86_64-3.7/first-stage
    creating build/temp.linux-x86_64-3.7/first-stage/PARSE
    creating build/temp.linux-x86_64-3.7/first-stage/PARSE/swig
    /home/mghenis/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wal
l -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -mar
ch=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -
ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/mghenis/anaconda3/inc
lude -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/mghenis/anaconda3/include -fPIC -Ifirst-stage/PARSE/ -I/home/mghenis/
anaconda3/include/python3.7m -c first-stage/PARSE/swig/wrapper.C -o build/temp.linux-x86_64-3.7/first-stage/PARSE/swig/wra
pper.o
    x86_64-conda_cos6-linux-gnu-cc: error trying to exec 'cc1plus': execvp: No such file or directory
    error: command '/home/mghenis/anaconda3/bin/x86_64-conda_cos6-linux-gnu-cc' failed with exit status 1
    ----------------------------------------
ERROR: Command errored out with exit status 1: /home/mghenis/anaconda3/bin/python -u -c 'import sys, setuptools, tokenize;
 sys.argv[0] = '"'"'/tmp/pip-install-p8m15xws/bllipparser/setup.py'"'"'; __file__='"'"'/tmp/pip-install-p8m15xws/bllippars
er/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f
.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-oznoxqhp/install-record.txt --sin
gle-version-externally-managed --compile --install-headers /home/mghenis/anaconda3/include/python3.7m/bllipparser Check th
e logs for full command output.
tinahuang222 commented 3 years ago

It appears that this solution works for linux system only, how do we resolve this issue for windows?