imaging update: overlay_images

thawn commented 1 year ago

changed default output for the method option "Segmentation mask over image" to png so that it can be directly viewed in the browser.

closes issue #75

FOR CONTRIBUTOR:

[x] - I have read the CONTRIBUTING.md document and this tool is appropriate for the galaxy-image-analysis repo.
[x] - License permits unrestricted use (educational + commercial)
[ ] - This PR adds a new tool or tool collection
[x] - This PR updates an existing tool or tool collection
[ ] - This PR does something else (explain below)

thawn commented 1 year ago

please note github does not show that we removed test3.tif, but we checked and it is gone in the feature branch.

bgruening commented 1 year ago

Thanks @thawn

tools/overlay_images/test-data/test3.tif → tools/overlay_images/test-data/test3.png

The remove is shown as a renaming here.

bgruening commented 1 year ago

Thanks @thawn!

thawn commented 1 year ago

@bgruening you are welcome Thanks for merging so quickly

BMCV / galaxy-image-analysis