search

BMILAB / AStrap

AStrap: Identification of alternative splicing from transcript sequences without a reference genome
GNU General Public License v2.0
4 stars 4 forks source link

Problem with readGMAP #6

Open ruthfa opened 4 years ago

ruthfa commented 4 years ago

Hi, I have a problem when I try to load the gmap file. cluster.align <- readGMAP("rna-new.gff3",raw.cluster, recluster=TRUE, recluster.identity = 0.7,recluster.coverage = 0.7) It returns:

Error in $<-.data.frame(*tmp*, "sameCluster", value = 0) : replacement has 1 row, data has 0

I don't know exactly what is happening Thanks in advance Ruth Freire

BMILAB commented 3 years ago

Hi, I have a problem when I try to load the gmap file. cluster.align <- readGMAP("rna-new.gff3",raw.cluster, recluster=TRUE, recluster.identity = 0.7,recluster.coverage = 0.7) It returns:

Error in $<-.data.frame(*tmp*, "sameCluster", value = 0) : replacement has 1 row, data has 0

I don't know exactly what is happening Thanks in advance Ruth Freire

Hi Ruth,

Thank you for your contacting, and sorry for late reply. I think this is due to the different GMAP version. Please refer to [https://github.com/BMILAB/AStrap/issues/5](). Please let me know if you have any questions. or you can share you gmap data to me if you donn't mind.