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BRAINSia / SINAPSE

SINAPSE is an interdisciplinary team of computer scientists, software engineers, and medical investigators.
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Segmentation Documentation And Script Creation #3

Open KKnoernschild opened 5 years ago

KKnoernschild commented 5 years ago

Goal

Create segmentation script that can read in a nifti image , and a txt Look Up Table file, and then combine and write those as a segmentation file (.seg.nrrd) using slicer and its' built in python package

directory location / current test files

/Shared/johnsonhj/2018Projects/20181112_RecodeLabelMaps/modified_data BAWHDAdultAtlas_FreeSurferConventionColorLUT_20160524_ModifiedForSlicer.txt TRIO_TRIO_MR2_dense_compact_seg.nii.gz