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SINAPSE is an interdisciplinary team of computer scientists, software engineers, and medical investigators.

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Learn ITK python interface #31

Closed hjmjohnson closed 5 years ago

hjmjohnson commented 5 years ago

User Story

As an Algorithm developer, I want to efficiently process medical images so that deep learning algorithms can be prototyped quickly.

Detailed Description

Learn how to use the ITK python interfaces

Tasks to be completed

[x] Review and be familiar with https://github.com/KitwareMedical/2019-03-13-KRSCourseInBiomedicalImageAnalysisAndVisualization

Acceptance Criteria

[x] Can read in images in ITK
[x] Can identify nearest index location of landmark points
[x] Can convert index locations to physical points

ArjitJ commented 5 years ago

Attempts to load "_RE_LE.nii.gz" files using itk.imread() result in Segmentation fault. A workaround to this is by using sitk.ReadImage() to read these files.